2025
A new chromosome-level genome assembly for western painted turtle Chrysemys
picta belli, a model for extreme physiological adaptations
Junhao Chen, John R. Bermingham Jr., Patrick Minx, Milinn
Kremitzky, Zhenguo Lin, Daniel E. Warren
bioRxiv, 2025.04.01.646645, 2025
Water lily pond: a multiomics database for water lilies
Chengjun Zhao, Ji Zhang, Yayu Chen, Lishuang Yang, Hongliang Chen, Yufan
Liang, Wenquan Wang, Shuang He, Yunqing Luo, Junyu Zhang, Hongbin Zhang, Shuting Yang, Guilian
Guo, Wenbai Dai, Zhijuan Yang, Junhao Chen, Yuhan Zhou, Wasi Ullah Khan,
Guanhua Liu, Yifan Jiang, Tianlong Zhu, Yingchun Xu, Pedro García-Caparros, Yves Van de Peer,
Jia-yu Xue, Chengjie Chen, Liangsheng Zhang, Fei Chen
Horticulture Research, 12 (Issue 6), 2025
2024
DataColor: unveiling biological data relationships through distinctive color
mapping
Shuang He, Wei Dong, Junhao Chen (Co-first author), Junyu
Zhang,
Weiwei Lin, Shuting Yang, Dong Xu, Yuhan Zhou, Benben Miao, Wenquan Wang, Fei Chen
Horticulture Research, 11 (2), uhad273, 2024
PhyloForge: Unifying Micro- and Macroevolution With Comprehensive Genomic
Signals
Ya Wang, Wei Dong, Yufan Liang, Weiwei Lin, Junhao Chen,
Robert Henry, F Chen
Molecular Ecology Resources, 2024
Chromosome-level subgenome-aware de novo assembly of Saccharomyces
bayanus
provides insight into genome divergence after hybridization
Cory Gardner, Junhao Chen (Co-first author), Christina
Hadfield, Zhaolian Lu, David Debruin, Yu Zhan, Maureen Donlin, Tae-Hyuk Ahn, Zhenguo Lin
Genome Research, 2024
Transcriptome-wide expression landscape and starch synthesis pathway
co-expression network in sorghum
Zhenbin Hu, Junhao Chen, Marcus O Olatoye, Hengyou Zhang,
Zhenguo Lin
The Plant Genome, 17 (2), e20448, 2024
2022
GROP: A genomic information repository for oilplants
Wenlei Guo, Hongmiao Jin, Junhao Chen, Jianqin Huang,
Dingwei Zheng, Zhitao Cheng, Xinyao Liu, Zhengfu Yang, Fei Chen, Kean-Jin Lim, Zhengjia Wang
Frontiers in Plant Science, 13, 1023938, 2022
2021
Identification and Analysis of the AP2 Subfamily Transcription Factors in the
Pecan (Carya illinoinensis)
Zhengfu Yang, Hongmiao Jin, Junhao Chen, Caiyun Li, Jiani
Wang, Jie Luo, Zhengjia Wang
International Journal of Molecular Sciences, 22 (24), 13568, 2021
Reassessment of Annamocarya sinesis (Carya sinensis) Taxonomy through
Concatenation and Coalescence Phylogenetic Analysis
Jie Luo, Junhao Chen, Wenlei Guo, Zhengfu Yang, Kean-Jin
Lim, Zhengjia Wang
Plants, 11 (1), 52, 2021
2020
The water lily genome and the early evolution of flowering plants
Liangsheng Zhang, Fei Chen, Xingtan Zhang, Zhen Li, Yiyong Zhao, Rolf Lohaus,
Xiaojun Chang, Wei Dong, Simon YW Ho, Xing Liu, Aixia Song, Junhao Chen, Wenlei
Guo, Zhengjia Wang, Yingyu Zhuang, Haifeng Wang, Xuequn Chen, Juan Hu, Yanhui Liu, Yuan Qin, Kai
Wang, Shanshan Dong, Yang Liu, Shouzhou Zhang, Xianxian Yu, Qian Wu, Liangsheng Wang, Xueqing
Yan, Yuannian Jiao, Hongzhi Kong, Xiaofan Zhou, Cuiwei Yu, Yuchu Chen, Fan Li, Jihua Wang, Wei
Chen, Xinlu Chen, Qidong Jia, Chi Zhang, Yifan Jiang, Wanbo Zhang, Guanhua Liu, Jianyu Fu, Feng
Chen, Hong Ma, Yves Van de Peer, Haibao Tang
Nature, 577 (7788), 79-84, 2020
Colchicine-Induced Polyploidy in Rhododendron fortunei Lindl
Lan Mo, Junhao Chen, Xiongzhen Lou, Qiangwei Xu, Renhui
Dong, Zaikang Tong, Huahong Huang, Erpei Lin
Plants, 9 (4), 424, 2020
Induction and characterization of polyploids from seeds of Rhododendron
fortunei Lindl.
Lan Mo, Junhao Chen, Fei Chen, Qiangwei XU, Zaikang Tong,
Renhui Dong, Xiongzhen Lou, Erpei Lin
Journal of Integrative Agriculture, 19 (8), 2016-2026, 2020
Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
Wenlei Guo, Junhao Chen (Co-first author), Jian Li, Jianqin
Huang, Zhengjia Wang, Kean-Jin Lim
Horticulture Research, 7, 2020
The genome sequence of star fruit (Averrhoa carambola)
Shasha Wu, Wei Sun, Zhichao Xu, Junwen Zhai, Xiaoping Li, Chengru Li, Diyang
Zhang, Xiaoqian Wu, Liming Shen, Junhao Chen, Hui Ren, Xiaoyu Dai, Zhongwu Dai,
Yamei Zhao, Lei Chen, Mengxia Cao, Xinyu Xie, Xuedie Liu, Donghui Peng, Jianwen Dong, Yu-Yun
Hsiao, Shi-lin Chen, Wen-Chieh Tsai, Siren Lan, Zhong-Jian Liu
Horticulture Research, 7, 2020
2019
Genome sequences of horticultural plants: past, present, and future
Fei Chen, Yunfeng Song, Xiaojiang Li, Junhao Chen, Lan Mo,
Xingtan Zhang, Zhenguo Lin, Liangsheng Zhang
Horticulture Research, 6, 2019
Genomics: cracking the mysteries of walnuts
Fei Chen, Junhao Chen (Co-first author), Zhengjia Wang,
Jiawei Zhang, Xiaojiang Li, Meigui Lin, Yunfeng Song, Liangsheng Zhang
Journal of Genetics, 98 (2), 33, 2019
Selection pressure causes differentiation of the SPL gene family in the
Juglandaceae
Di Wu, Jia Luo, Junhao Chen, Liangsheng Zhang, Kean-Jin Lim,
Zhengjia Wang
Molecular Genetics and Genomics, 294 (4), 1037-1048, 2019
2018
The sequenced angiosperm genomes and genome databases
Fei Chen, Wei Dong, Jiawei Zhang, Xinyue Guo, Junhao Chen,
Zhengjia Wang, Zhenguo Lin, Haibao Tang, Liangsheng Zhang
Frontiers in Plant Science, 9, 418, 2018
The chromosome-level quality genome provides insights into the evolution of
the biosynthesis genes for aroma compounds of Osmanthus fragrans
Xiulian Yang, Yuanzheng Yue, Haiyan Li, Wenjie Ding, Gongwei Chen, Tingting
Shi, Junhao Chen, Min S Park, Fei Chen, Lianggui Wang
Horticulture Research, 5, 2018
MGH: a genome hub for the medicinal plant maca (Lepidium meyenii)
Junhao Chen, Jiawei Zhang, Meigui Lin, Wei Dong, Xinyue Guo,
Yang Dong, Zhengjia Wang, Liangsheng Zhang, Fei Chen
Database, 2018, bay113, 2018
realDB: a genome and transcriptome resource for the red algae (phylum
Rhodophyta)
Fei Chen, Jiawei Zhang, Junhao Chen (Co-first author),
Xiaojiang Li, Wei Dong, Jian Hu, Meigui Lin, Yanhui Liu, Guowei Li, Zhengjia Wang,
Liangsheng Zhang
Database, 2018, bay072, 2018